Genome Meta Information: Cupriavidus gilardii CY1 (GCA_025399565.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025399565.1 | ||
| HOMD Taxon-ID | HMT-0027 | ||
| Species Name (in use by HOMD) | Cupriavidus gilardii | ||
| Organism Name (as deposited) | HMT-027 Cupriavidus gilardii CY1 | ||
| Strain or Isolate | CY1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus; s__Cupriavidus gilardii |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 99.2 | ||
| Contigs |
|
||
| Total Sequence Length | 5,544,442 (bp) | ||
| GC Percentage | 67.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/399/565/GCA_025399565.1_ASM2539956v1 | ||
| CDS | 4887 | ||
| Genes | 4977 | ||
| mRNA | 4977 | ||
| misc RNA | 22 | ||
| rRNA | 7 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.64 % | ||
| CheckM Completeness | 89.71 % | ||
| CheckM Contamination | 1.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2539956v1 |
| GenBank Assembly Accession | GCA_025399565.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025399565.1 [NCBI] |
| BioSample | SAMN30881886 [NCBI] |
| BioProject | PRJNA881018 [NCBI] |
| Submitter | State Key Laboratory of Pathogen and Biosecurity |
| Submission Date | 2022-09-16T03:18:04.320 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAODVC01 |
| NCBI TaxID | 82541 |
| Isolation Source | bronchoalveolar lavage fluid |
| Geo Location | China: Beijing |
