Genome Meta Information: Lactobacillus acidophilus NC56 (GCA_025665255.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025665255.1 | ||
| HOMD Taxon-ID | HMT-0529 | ||
| Species Name (in use by HOMD) | Lactobacillus acidophilus | ||
| Organism Name (as deposited) | HMT-529 Lactobacillus acidophilus NC56 | ||
| Strain or Isolate | NC56 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus acidophilus |
||
| Sequencing Technology | Oxford Nanopore; DNBSEQ | ||
| Genome Coverage | 2014 | ||
| Contigs |
|
||
| Total Sequence Length | 2,031,081 (bp) | ||
| GC Percentage | 34.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/665/255/GCA_025665255.1_ASM2566525v1 | ||
| CDS | 1903 | ||
| Genes | 2022 | ||
| mRNA | 2022 | ||
| misc RNA | 43 | ||
| rRNA | 15 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.93 % | ||
| CheckM Completeness | 94.47 % | ||
| CheckM Contamination | 0.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2566525v1 |
| GenBank Assembly Accession | GCA_025665255.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025665255.1 [NCBI] |
| BioSample | SAMN31046618 [NCBI] |
| BioProject | PRJNA884752 [NCBI] |
| Submitter | Shandong First Medical University |
| Submission Date | 2022-09-27T20:59:04.423 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1579 |
| Isolation Source | GUT |
| Geo Location | China:Shandong |
