Genome Meta Information: Capnocytophaga ochracea KCOM 2191 (GCA_026013785.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026013785.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea KCOM 2191 | ||
| Strain or Isolate | KCOM 2191 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | PacBio RSII; Illumina HiSeq | ||
| Genome Coverage | 1039 | ||
| Contigs |
|
||
| Total Sequence Length | 2,672,569 (bp) | ||
| GC Percentage | 39.7 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/013/785/GCA_026013785.1_ASM2601378v1 | ||
| CDS | 2243 | ||
| Genes | 2311 | ||
| mRNA | 2311 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.52 % | ||
| CheckM Completeness | 94.35 % | ||
| CheckM Contamination | 3.54 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2601378v1 |
| GenBank Assembly Accession | GCA_026013785.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026013785.1 [NCBI] |
| BioSample | SAMN31453015 [NCBI] |
| BioProject | PRJNA894344 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2022-10-26T04:18:03.910 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1018 |
| Isolation Source | Subgingival dental plaque, gingivitis |
| Geo Location | South Korea: Gwangju |
