Genome Meta Information: Staphylococcus capitis CCSM0123 (GCA_026430575.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026430575.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis CCSM0123 | ||
| Strain or Isolate | CCSM0123 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina; PacBio | ||
| Genome Coverage | 427.68 | ||
| Contigs |
|
||
| Total Sequence Length | 2,549,044 (bp) | ||
| GC Percentage | 32.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/430/575/GCA_026430575.1_ASM2643057v1 | ||
| CDS | 2471 | ||
| Genes | 2611 | ||
| mRNA | 2611 | ||
| misc RNA | 59 | ||
| rRNA | 19 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.83 % | ||
| CheckM Completeness | 97.75 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2643057v1 |
| GenBank Assembly Accession | GCA_026430575.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026430575.1 [NCBI] |
| BioSample | SAMN31437481 [NCBI] |
| BioProject | PRJNA894108 [NCBI] |
| Submitter | Shanghai Institute of Technology |
| Submission Date | 2022-10-25T08:47:03.533 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29388 |
| Isolation Source | |
| Geo Location | China:shanghai |
