Genome Meta Information: Pseudomonas otitidis BC12 (GCA_026651425.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026651425.1 | ||
| HOMD Taxon-ID | HMT-0834 | ||
| Species Name (in use by HOMD) | Pseudomonas otitidis | ||
| Organism Name (as deposited) | HMT-834 Pseudomonas otitidis BC12 | ||
| Strain or Isolate | BC12 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas; s__Metapseudomonas otitidis |
||
| Sequencing Technology | Illumina MiniSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 6,113,211 (bp) | ||
| GC Percentage | 67.28 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/651/425/GCA_026651425.1_ASM2665142v1 | ||
| CDS | 5456 | ||
| Genes | 5617 | ||
| mRNA | 5617 | ||
| misc RNA | 75 | ||
| rRNA | 12 | ||
| tRNA | 73 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.07 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.88 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2665142v1 |
| GenBank Assembly Accession | GCA_026651425.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026651425.1 [NCBI] |
| BioSample | SAMN30101387 [NCBI] |
| BioProject | PRJNA473419 [NCBI] |
| Submitter | Tokyo Medical and Dental University |
| Submission Date | 2022-08-02T10:13:04.216 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 319939 |
| Isolation Source | river water |
| Geo Location | Ghana |
