Genome Meta Information: Streptococcus oralis A12046408 (GCA_026782545.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026782545.1 | ||
| HOMD Taxon-ID | HMT-0071 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-071 Streptococcus oralis subsp. tigurinus A12046408 | ||
| Strain or Isolate | A12046408 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_BW |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 59.72 | ||
| Contigs |
|
||
| Total Sequence Length | 1,867,867 (bp) | ||
| GC Percentage | 41.3 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/782/545/GCA_026782545.1_ASM2678254v1 | ||
| CDS | 1779 | ||
| Genes | 1870 | ||
| mRNA | 1870 | ||
| misc RNA | 43 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.65 % | ||
| CheckM Completeness | 99.79 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2678254v1 |
| GenBank Assembly Accession | GCA_026782545.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026782545.1 [NCBI] |
| BioSample | SAMN26135052 [NCBI] |
| BioProject | PRJNA808899 [NCBI] |
| Submitter | Region Zealand |
| Submission Date | 2022-02-21T10:09:06.293 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAKUWR01 |
| NCBI TaxID | 1303 |
| Isolation Source | blood |
| Geo Location | Denmark:Copenhagen |
