Genome Meta Information: Limosilactobacillus vaginalis VAG1 (GCA_026935945.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026935945.1 | ||
| HOMD Taxon-ID | HMT-0051 | ||
| Species Name (in use by HOMD) | Limosilactobacillus vaginalis | ||
| Organism Name (as deposited) | HMT-051 Limosilactobacillus vaginalis VAG1 | ||
| Strain or Isolate | VAG1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus vaginalis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 1282 | ||
| Contigs |
|
||
| Total Sequence Length | 1,844,314 (bp) | ||
| GC Percentage | 40.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/935/945/GCA_026935945.1_ASM2693594v1 | ||
| CDS | 1750 | ||
| Genes | 1864 | ||
| mRNA | 1864 | ||
| misc RNA | 37 | ||
| rRNA | 15 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.2 % | ||
| CheckM Completeness | 99.25 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2693594v1 |
| GenBank Assembly Accession | GCA_026935945.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026935945.1 [NCBI] |
| BioSample | SAMN23470199 [NCBI] |
| BioProject | PRJNA784112 [NCBI] |
| Submitter | UFMG |
| Submission Date | 2021-11-27T15:13:03.980 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAKNNW01 |
| NCBI TaxID | 1633 |
| Isolation Source | vaginal fluid |
| Geo Location | Brazil:Belo Horizonte |
