Genome Meta Information: Brevundimonas diminuta R79 (GCA_027158175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_027158175.1 | ||
| HOMD Taxon-ID | HMT-0590 | ||
| Species Name (in use by HOMD) | Brevundimonas diminuta | ||
| Organism Name (as deposited) | HMT-590 Brevundimonas diminuta R79 | ||
| Strain or Isolate | R79 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas; s__Brevundimonas diminuta_D |
||
| Sequencing Technology | Illumina novaseq 6000 | ||
| Genome Coverage | 396 | ||
| Contigs |
|
||
| Total Sequence Length | 3,359,331 (bp) | ||
| GC Percentage | 67.26 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/158/175/GCA_027158175.1_ASM2715817v1 | ||
| CDS | 3198 | ||
| Genes | 3268 | ||
| mRNA | 3268 | ||
| misc RNA | 13 | ||
| rRNA | 3 | ||
| tRNA | 54 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 96.11 % | ||
| CheckM Completeness | 99.36 % | ||
| CheckM Contamination | 3.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2715817v1 |
| GenBank Assembly Accession | GCA_027158175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_027158175.1 [NCBI] |
| BioSample | SAMN32212095 [NCBI] |
| BioProject | PRJNA911859 [NCBI] |
| Submitter | University of Jinan |
| Submission Date | 2022-12-13T21:51:03.193 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAPVLY01 |
| NCBI TaxID | 293 |
| Isolation Source | activated sludge from saponification wastewater treatment plant |
| Geo Location | China: Binzhou City, Shandong |
