Genome Meta Information: Lactobacillus crispatus Lcr-MH175 (GCA_027271175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_027271175.1 | ||
| HOMD Taxon-ID | HMT-0817 | ||
| Species Name (in use by HOMD) | Lactobacillus crispatus | ||
| Organism Name (as deposited) | HMT-817 Lactobacillus crispatus Lcr-MH175 | ||
| Strain or Isolate | Lcr-MH175 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus crispatus |
||
| Sequencing Technology | BGI&Nanopore | ||
| Genome Coverage | 150 | ||
| Contigs |
|
||
| Total Sequence Length | 2,471,292 (bp) | ||
| GC Percentage | 37.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/271/175/GCA_027271175.1_ASM2727117v1 | ||
| CDS | 2547 | ||
| Genes | 2691 | ||
| mRNA | 2691 | ||
| misc RNA | 58 | ||
| rRNA | 15 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.54 % | ||
| CheckM Completeness | 95 % | ||
| CheckM Contamination | 0.95 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2727117v1 |
| GenBank Assembly Accession | GCA_027271175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_027271175.1 [NCBI] |
| BioSample | SAMN32119433 [NCBI] |
| BioProject | PRJNA910240 [NCBI] |
| Submitter | Harbin Meihua Biotechnology Co., LTD |
| Submission Date | 2022-12-08T21:31:03.293 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 47770 |
| Isolation Source | vagina |
| Geo Location | China:Nanchang |
