Genome Meta Information: Parvimonas micra PM79KC-AC-1 (GCA_027460365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_027460365.1 | ||
| HOMD Taxon-ID | HMT-0111 | ||
| Species Name (in use by HOMD) | Parvimonas micra | ||
| Organism Name (as deposited) | HMT-111 Parvimonas micra PM79KC-AC-1 | ||
| Strain or Isolate | PM79KC-AC-1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas; s__Parvimonas micra |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 161 | ||
| Contigs |
|
||
| Total Sequence Length | 1,731,212 (bp) | ||
| GC Percentage | 29.03 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/460/365/GCA_027460365.1_ASM2746036v1 | ||
| CDS | 1571 | ||
| Genes | 1655 | ||
| mRNA | 1655 | ||
| misc RNA | 41 | ||
| rRNA | 4 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.94 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2746036v1 |
| GenBank Assembly Accession | GCA_027460365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_027460365.1 [NCBI] |
| BioSample | SAMN29629854 [NCBI] |
| BioProject | PRJNA857572 [NCBI] |
| Submitter | Biomedical research institute (INIBIC) |
| Submission Date | 2022-07-11T08:07:04.443 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JANDZT01 |
| NCBI TaxID | 33033 |
| Isolation Source | female 63 year old colorectal cancer patient 79 colon adenocarcinoma |
| Geo Location | Spain: Galicia |
