Genome Meta Information: Staphylococcus auricularis T1 (GCA_028464905.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028464905.1 | ||
| HOMD Taxon-ID | HMT-0331 | ||
| Species Name (in use by HOMD) | Staphylococcus auricularis | ||
| Organism Name (as deposited) | HMT-331 Staphylococcus auricularis T1 | ||
| Strain or Isolate | T1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus auricularis |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 49.1 | ||
| Contigs |
|
||
| Total Sequence Length | 2,237,686 (bp) | ||
| GC Percentage | 37.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/464/905/GCA_028464905.1_ASM2846490v1 | ||
| CDS | 2174 | ||
| Genes | 2251 | ||
| mRNA | 2251 | ||
| misc RNA | 39 | ||
| rRNA | 4 | ||
| tRNA | 33 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.74 % | ||
| CheckM Completeness | 95.46 % | ||
| CheckM Contamination | 1.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2846490v1 |
| GenBank Assembly Accession | GCA_028464905.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028464905.1 [NCBI] |
| BioSample | SAMN31005934 [NCBI] |
| BioProject | PRJNA883828 [NCBI] |
| Submitter | University of Lagos |
| Submission Date | 2022-09-24T22:48:04.600 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAQPQT01 |
| NCBI TaxID | 29379 |
| Isolation Source | Deteriorating Pineapple |
| Geo Location | Nigeria: Lagos |
