Genome Meta Information: Lactobacillus crispatus VSI04 (GCA_029011155.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029011155.1 | ||
| HOMD Taxon-ID | HMT-0817 | ||
| Species Name (in use by HOMD) | Lactobacillus crispatus | ||
| Organism Name (as deposited) | HMT-817 Lactobacillus crispatus VSI04 | ||
| Strain or Isolate | VSI04 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus crispatus |
||
| Sequencing Technology | Oxford Nanopore MinION | ||
| Genome Coverage | 336.278 | ||
| Contigs |
|
||
| Total Sequence Length | 2,322,225 (bp) | ||
| GC Percentage | 37.33 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/011/155/GCA_029011155.1_ASM2901115v1 | ||
| CDS | 2307 | ||
| Genes | 2443 | ||
| mRNA | 2443 | ||
| misc RNA | 47 | ||
| rRNA | 15 | ||
| tRNA | 73 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.73 % | ||
| CheckM Completeness | 93.05 % | ||
| CheckM Contamination | 1.49 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2901115v1 |
| GenBank Assembly Accession | GCA_029011155.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029011155.1 [NCBI] |
| BioSample | SAMN33275431 [NCBI] |
| BioProject | PRJNA934404 [NCBI] |
| Submitter | Seattle University |
| Submission Date | 2023-02-13T18:41:04.396 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 47770 |
| Isolation Source | |
| Geo Location | USA: Houston, TX |
