Genome Meta Information: Limosilactobacillus fermentum KUFM408 (GCA_029223925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029223925.1 | ||
| HOMD Taxon-ID | HMT-0608 | ||
| Species Name (in use by HOMD) | Limosilactobacillus fermentum | ||
| Organism Name (as deposited) | HMT-608 Limosilactobacillus fermentum KUFM408 | ||
| Strain or Isolate | KUFM408 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus fermentum |
||
| Sequencing Technology | Oxford Nanopore MinION | ||
| Genome Coverage | 65 | ||
| Contigs |
|
||
| Total Sequence Length | 2,077,616 (bp) | ||
| GC Percentage | 51.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/223/925/GCA_029223925.1_ASM2922392v1 | ||
| CDS | 2040 | ||
| Genes | 2145 | ||
| mRNA | 2145 | ||
| misc RNA | 30 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.22 % | ||
| CheckM Completeness | 92.24 % | ||
| CheckM Contamination | 7.89 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2922392v1 |
| GenBank Assembly Accession | GCA_029223925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029223925.1 [NCBI] |
| BioSample | SAMN33591059 [NCBI] |
| BioProject | PRJNA941153 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2023-03-06T04:18:03.066 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1613 |
| Isolation Source | missing |
| Geo Location | missing |
