Genome Meta Information: Rhodobacter capsulatus 37b4 (GCA_029277405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029277405.1 | ||
| HOMD Taxon-ID | HMT-0857 | ||
| Species Name (in use by HOMD) | Rhodobacter capsulatus | ||
| Organism Name (as deposited) | HMT-857 Rhodobacter capsulatus 37b4 | ||
| Strain or Isolate | 37b4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter; s__Rhodobacter capsulatus |
||
| Sequencing Technology | Oxford Nanopore MinION; Illumina MiSeq | ||
| Genome Coverage | 199 | ||
| Contigs |
|
||
| Total Sequence Length | 3,912,233 (bp) | ||
| GC Percentage | 66.23 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/277/405/GCA_029277405.1_ASM2927740v1 | ||
| CDS | 3744 | ||
| Genes | 3841 | ||
| mRNA | 3841 | ||
| misc RNA | 27 | ||
| rRNA | 12 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.39 % | ||
| CheckM Completeness | 98.34 % | ||
| CheckM Contamination | 1.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2927740v1 |
| GenBank Assembly Accession | GCA_029277405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029277405.1 [NCBI] |
| BioSample | SAMN33261865 [NCBI] |
| BioProject | PRJNA933930 [NCBI] |
| Submitter | University of British Columbia |
| Submission Date | 2023-02-11T17:46:03.623 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1061 |
| Isolation Source | |
| Geo Location | Germany |
