Genome Meta Information: Ligilactobacillus salivarius LMG 9477 (GCA_029823545.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029823545.1 | ||
| HOMD Taxon-ID | HMT-0756 | ||
| Species Name (in use by HOMD) | Ligilactobacillus salivarius | ||
| Organism Name (as deposited) | HMT-756 Ligilactobacillus salivarius LMG 9477 | ||
| Strain or Isolate | LMG 9477 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus; s__Ligilactobacillus salivarius |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 77 | ||
| Contigs |
|
||
| Total Sequence Length | 1,995,138 (bp) | ||
| GC Percentage | 32.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/823/545/GCA_029823545.1_ASM2982354v1 | ||
| CDS | 1924 | ||
| Genes | 2035 | ||
| mRNA | 2035 | ||
| misc RNA | 37 | ||
| rRNA | 8 | ||
| tRNA | 65 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 100 % | ||
| CheckM Completeness | 97.98 % | ||
| CheckM Contamination | 0.85 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2982354v1 |
| GenBank Assembly Accession | GCA_029823545.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029823545.1 [NCBI] |
| BioSample | SAMN33225758 [NCBI] |
| BioProject | PRJNA933129 [NCBI] |
| Submitter | Chr-Hansen |
| Submission Date | 2023-02-09T10:45:08.617 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JARACG01 |
| NCBI TaxID | 1624 |
| Isolation Source | |
| Geo Location | not provided |
