Genome Meta Information: Pseudomonas otitidis GD03976 (GCA_029838685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029838685.1 | ||
| HOMD Taxon-ID | HMT-0834 | ||
| Species Name (in use by HOMD) | Pseudomonas otitidis | ||
| Organism Name (as deposited) | HMT-834 Pseudomonas otitidis GD03976 | ||
| Strain or Isolate | GD03976 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas; s__Metapseudomonas otitidis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 71.07 | ||
| Contigs |
|
||
| Total Sequence Length | 6,219,932 (bp) | ||
| GC Percentage | 66.99 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/838/685/GCA_029838685.1_ASM2983868v1 | ||
| CDS | 5581 | ||
| Genes | 5730 | ||
| mRNA | 5730 | ||
| misc RNA | 79 | ||
| rRNA | 3 | ||
| tRNA | 66 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.97 % | ||
| CheckM Completeness | 99.34 % | ||
| CheckM Contamination | 0.77 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2983868v1 |
| GenBank Assembly Accession | GCA_029838685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029838685.1 [NCBI] |
| BioSample | SAMN30525432 [NCBI] |
| BioProject | PRJNA868296 [NCBI] |
| Submitter | Washington University in St. Louis School of Medicine |
| Submission Date | 2022-08-26T16:24:08.946 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAOBZB01 |
| NCBI TaxID | 319939 |
| Isolation Source | |
| Geo Location | Pakistan |
