Genome Meta Information: Pseudomonas oleovorans GD03704 (GCA_029843895.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029843895.1 | ||
| HOMD Taxon-ID | HMT-0740 | ||
| Species Name (in use by HOMD) | Pseudomonas oleovorans | ||
| Organism Name (as deposited) | HMT-740 Pseudomonas oleovorans GD03704 | ||
| Strain or Isolate | GD03704 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E; s__Pseudomonas_E oleovorans |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 30.313 | ||
| Contigs |
|
||
| Total Sequence Length | 4,684,111 (bp) | ||
| GC Percentage | 62.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/843/895/GCA_029843895.1_ASM2984389v1 | ||
| CDS | 4443 | ||
| Genes | 4684 | ||
| mRNA | 4684 | ||
| misc RNA | 163 | ||
| rRNA | 12 | ||
| tRNA | 65 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.9 % | ||
| CheckM Completeness | 99.77 % | ||
| CheckM Contamination | 1.22 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2984389v1 |
| GenBank Assembly Accession | GCA_029843895.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029843895.1 [NCBI] |
| BioSample | SAMN30525160 [NCBI] |
| BioProject | PRJNA868296 [NCBI] |
| Submitter | Washington University in St. Louis School of Medicine |
| Submission Date | 2022-08-26T16:24:06.413 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAOCJE01 |
| NCBI TaxID | 301 |
| Isolation Source | |
| Geo Location | Pakistan |
