Genome Meta Information: Staphylococcus capitis ACVHD (GCA_029924965.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029924965.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis ACVHD | ||
| Strain or Isolate | ACVHD | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 89 | ||
| Contigs |
|
||
| Total Sequence Length | 2,613,967 (bp) | ||
| GC Percentage | 32.65 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/924/965/GCA_029924965.1_ASM2992496v1 | ||
| CDS | 2524 | ||
| Genes | 2645 | ||
| mRNA | 2645 | ||
| misc RNA | 53 | ||
| rRNA | 8 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.78 % | ||
| CheckM Completeness | 99.63 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2992496v1 |
| GenBank Assembly Accession | GCA_029924965.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029924965.1 [NCBI] |
| BioSample | SAMN31818702 [NCBI] |
| BioProject | PRJNA46333 [NCBI] |
| Submitter | NISC - NIH Intramural Sequencing Center |
| Submission Date | 2022-11-21T14:51:09.180 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAREHX01 |
| NCBI TaxID | 29388 |
| Isolation Source | skin |
| Geo Location | USA |
