Genome Meta Information: Staphylococcus epidermidis 7052 (GCA_030014105.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030014105.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis 7052 | ||
| Strain or Isolate | 7052 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | Oxford Nanopore GridION | ||
| Genome Coverage | 203 | ||
| Contigs |
|
||
| Total Sequence Length | 2,526,290 (bp) | ||
| GC Percentage | 32.23 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/014/105/GCA_030014105.1_ASM3001410v1 | ||
| CDS | 2616 | ||
| Genes | 2779 | ||
| mRNA | 2779 | ||
| misc RNA | 83 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.41 % | ||
| CheckM Completeness | 82.09 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3001410v1 |
| GenBank Assembly Accession | GCA_030014105.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN33407031 [NCBI] |
| BioProject | PRJNA937407 [NCBI] |
| Submitter | Universiteit Gent |
| Submission Date | 2023-02-22T02:18:03.940 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | Nose |
| Geo Location | Algeria: Ouargla |
