Genome Meta Information: Staphylococcus caprae GBY4178 (GCA_030053435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030053435.1 | ||
| HOMD Taxon-ID | HMT-0567 | ||
| Species Name (in use by HOMD) | Staphylococcus caprae | ||
| Organism Name (as deposited) | HMT-567 Staphylococcus caprae GBY4178 | ||
| Strain or Isolate | GBY4178 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus caprae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 2,544,326 (bp) | ||
| GC Percentage | 33.42 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/053/435/GCA_030053435.1_KVI_CoNS_GBY4178 | ||
| CDS | 2462 | ||
| Genes | 2627 | ||
| mRNA | 2627 | ||
| misc RNA | 93 | ||
| rRNA | 10 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.69 % | ||
| CheckM Completeness | 97.86 % | ||
| CheckM Contamination | 0.06 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | KVI_CoNS_GBY4178 |
| GenBank Assembly Accession | GCA_030053435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030053435.1 [NCBI] |
| BioSample | SAMN35079182 [NCBI] |
| BioProject | PRJNA972462 [NCBI] |
| Submitter | Kimron Veterinary Institute |
| Submission Date | 2023-05-14T16:28:03.683 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASFZT01 |
| NCBI TaxID | 29380 |
| Isolation Source | milk |
| Geo Location | Israel |
