Genome Meta Information: Pseudomonas otitidis TL17 (GCA_030166435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030166435.1 | ||
| HOMD Taxon-ID | HMT-0834 | ||
| Species Name (in use by HOMD) | Pseudomonas otitidis | ||
| Organism Name (as deposited) | HMT-834 Pseudomonas otitidis TL17 | ||
| Strain or Isolate | TL17 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas; s__Metapseudomonas otitidis |
||
| Sequencing Technology | Oxford Nanopore; BGI | ||
| Genome Coverage | 759 | ||
| Contigs |
|
||
| Total Sequence Length | 6,062,106 (bp) | ||
| GC Percentage | 67.12 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/166/435/GCA_030166435.1_ASM3016643v1 | ||
| CDS | 5464 | ||
| Genes | 5634 | ||
| mRNA | 5634 | ||
| misc RNA | 83 | ||
| rRNA | 12 | ||
| tRNA | 74 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.2 % | ||
| CheckM Completeness | 99.89 % | ||
| CheckM Contamination | 0.8 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3016643v1 |
| GenBank Assembly Accession | GCA_030166435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030166435.1 [NCBI] |
| BioSample | SAMN35302191 [NCBI] |
| BioProject | PRJNA974950 [NCBI] |
| Submitter | Shandong First Medical University |
| Submission Date | 2023-05-22T03:57:03.260 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 319939 |
| Isolation Source | water |
| Geo Location | China:Jinan |
