Genome Meta Information: Kingella negevensis D2292 (GCA_030177875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030177875.1 | ||
| HOMD Taxon-ID | HMT-0405 | ||
| Species Name (in use by HOMD) | Kingella negevensis | ||
| Organism Name (as deposited) | HMT-405 Kingella negevensis D2292 | ||
| Strain or Isolate | D2292 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_C; s__Kingella_C negevensis |
||
| Sequencing Technology | Oxford Nanopore MinION; Illumina NovaSeq | ||
| Genome Coverage | 60.4 | ||
| Contigs |
|
||
| Total Sequence Length | 2,201,616 (bp) | ||
| GC Percentage | 45.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/177/875/GCA_030177875.1_ASM3017787v1 | ||
| CDS | 2239 | ||
| Genes | 2330 | ||
| mRNA | 2330 | ||
| misc RNA | 16 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 90.73 % | ||
| CheckM Contamination | 1.62 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3017787v1 |
| GenBank Assembly Accession | GCA_030177875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030177875.1 [NCBI] |
| BioSample | SAMN31580843 [NCBI] |
| BioProject | PRJNA896475 [NCBI] |
| Submitter | University of Pennsylvania |
| Submission Date | 2022-11-03T09:05:04.073 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1522312 |
| Isolation Source | Oropharyngeal Swab |
| Geo Location | Israel:Beer-Sheva |
