Taxon Table | Genome Table
Genome Meta Information:
Neisseria
mucosa
UMB7974A (GCA_030216405.1)
| HOMD Genome-ID |
GCA_030216405.1
|
| HOMD Taxon-ID |
HMT-0682
|
| Species Name (in use by HOMD) |
Neisseria mucosa
|
| Organism Name (as deposited) |
HMT-682 Neisseria mucosa UMB7974A
|
| Strain or Isolate |
UMB7974A
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;
s__Neisseria mucosa |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
118.896
|
| Contigs |
Number of Contigs: 211
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,513,859 (bp) |
| GC Percentage |
51.26
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/216/405/GCA_030216405.1_ASM3021640v1
|
| CDS |
2220
|
| Genes |
2294
|
| mRNA |
2294
|
| misc RNA |
17
|
| rRNA |
3
|
| tRNA |
53
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
97.28 %
|
| CheckM Completeness |
99.43 %
|
| CheckM Contamination |
0.5 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM3021640v1
|
| GenBank Assembly Accession |
GCA_030216405.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_030216405.1
[NCBI]
|
| BioSample |
SAMN34996588
[NCBI]
|
| BioProject |
PRJNA970254
[NCBI]
|
| Submitter |
Loyola University Chicago
|
| Submission Date |
2023-05-08T11:18:09.433
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JASOLC01
|
| NCBI TaxID |
488
|
| Isolation Source |
urine
|
| Geo Location |
USA: Maywood, IL
|
