Genome Meta Information: Peptoniphilus lacrimalis UMB12383A (GCA_030223765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030223765.1 | ||
| HOMD Taxon-ID | HMT-0836 | ||
| Species Name (in use by HOMD) | Peptoniphilus lacrimalis | ||
| Organism Name (as deposited) | HMT-836 Peptoniphilus lacrimalis UMB12383A | ||
| Strain or Isolate | UMB12383A | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A; s__Peptoniphilus_A lacrimalis |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 334.105 | ||
| Contigs |
|
||
| Total Sequence Length | 1,786,622 (bp) | ||
| GC Percentage | 30.17 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/223/765/GCA_030223765.1_ASM3022376v1 | ||
| CDS | 1702 | ||
| Genes | 1770 | ||
| mRNA | 1770 | ||
| misc RNA | 23 | ||
| rRNA | 3 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.54 % | ||
| CheckM Completeness | 92.5 % | ||
| CheckM Contamination | 3.81 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3022376v1 |
| GenBank Assembly Accession | GCA_030223765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030223765.1 [NCBI] |
| BioSample | SAMN34998815 [NCBI] |
| BioProject | PRJNA970254 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2023-05-08T14:01:09.567 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JASOSZ01 |
| NCBI TaxID | 33031 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
