Genome Meta Information: Peptoniphilus lacrimalis UMB10230B.2 (GCA_030228605.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030228605.1 | ||
| HOMD Taxon-ID | HMT-0836 | ||
| Species Name (in use by HOMD) | Peptoniphilus lacrimalis | ||
| Organism Name (as deposited) | HMT-836 Peptoniphilus lacrimalis UMB10230B.2 | ||
| Strain or Isolate | UMB10230B.2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A; s__Peptoniphilus_A lacrimalis |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 160.122 | ||
| Contigs |
|
||
| Total Sequence Length | 1,799,428 (bp) | ||
| GC Percentage | 30.02 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/228/605/GCA_030228605.1_ASM3022860v1 | ||
| CDS | 1665 | ||
| Genes | 1731 | ||
| mRNA | 1731 | ||
| misc RNA | 24 | ||
| rRNA | 5 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.47 % | ||
| CheckM Completeness | 93.69 % | ||
| CheckM Contamination | 7.2 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3022860v1 |
| GenBank Assembly Accession | GCA_030228605.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030228605.1 [NCBI] |
| BioSample | SAMN35153974 [NCBI] |
| BioProject | PRJNA970254 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2023-05-18T09:46:08.320 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JASOZY01 |
| NCBI TaxID | 33031 |
| Isolation Source | bladder urine |
| Geo Location | USA: Maywood, IL |
