Genome Meta Information: Corynebacterium accolens MSK161 (GCA_030229065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030229065.1 | ||
| HOMD Taxon-ID | HMT-0019 | ||
| Species Name (in use by HOMD) | Corynebacterium accolens | ||
| Organism Name (as deposited) | HMT-019 Corynebacterium accolens MSK161 | ||
| Strain or Isolate | MSK161 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium accolens |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 101 | ||
| Contigs |
|
||
| Total Sequence Length | 2,482,201 (bp) | ||
| GC Percentage | 59.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/065/GCA_030229065.1_ASM3022906v1 | ||
| CDS | 2265 | ||
| Genes | 2330 | ||
| mRNA | 2330 | ||
| misc RNA | 7 | ||
| rRNA | 5 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.59 % | ||
| CheckM Completeness | 95.89 % | ||
| CheckM Contamination | 2.46 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3022906v1 |
| GenBank Assembly Accession | GCA_030229065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030229065.1 [NCBI] |
| BioSample | SAMN35346750 [NCBI] |
| BioProject | PRJNA804245 [NCBI] |
| Submitter | Duke University |
| Submission Date | 2023-05-24T14:12:06.307 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASPHI01 |
| NCBI TaxID | 38284 |
| Isolation Source | nasopharyngeal swab |
| Geo Location | Botswana: Gaborone |
