Genome Meta Information: Corynebacterium pseudodiphtheriticum MSK300 (GCA_030229145.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030229145.1 | ||
| HOMD Taxon-ID | HMT-0060 | ||
| Species Name (in use by HOMD) | Corynebacterium pseudodiphtheriticum | ||
| Organism Name (as deposited) | HMT-060 Corynebacterium pseudodiphtheriticum MSK300 | ||
| Strain or Isolate | MSK300 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium pseudodiphtheriticum |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 104 | ||
| Contigs |
|
||
| Total Sequence Length | 2,425,046 (bp) | ||
| GC Percentage | 55.29 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/145/GCA_030229145.1_ASM3022914v1 | ||
| CDS | 2217 | ||
| Genes | 2275 | ||
| mRNA | 2275 | ||
| misc RNA | 6 | ||
| rRNA | 3 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.08 % | ||
| CheckM Completeness | 98.85 % | ||
| CheckM Contamination | 0.82 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3022914v1 |
| GenBank Assembly Accession | GCA_030229145.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030229145.1 [NCBI] |
| BioSample | SAMN35346782 [NCBI] |
| BioProject | PRJNA804245 [NCBI] |
| Submitter | Duke University |
| Submission Date | 2023-05-24T14:12:06.707 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASPGC01 |
| NCBI TaxID | 37637 |
| Isolation Source | nasopharyngeal swab |
| Geo Location | Botswana: Gaborone |
