Genome Meta Information: Corynebacterium pseudodiphtheriticum MSK172 (GCA_030229195.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030229195.1 | ||
| HOMD Taxon-ID | HMT-0060 | ||
| Species Name (in use by HOMD) | Corynebacterium pseudodiphtheriticum | ||
| Organism Name (as deposited) | HMT-060 Corynebacterium pseudodiphtheriticum MSK172 | ||
| Strain or Isolate | MSK172 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium pseudodiphtheriticum |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 105 | ||
| Contigs |
|
||
| Total Sequence Length | 2,405,178 (bp) | ||
| GC Percentage | 55.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/195/GCA_030229195.1_ASM3022919v1 | ||
| CDS | 2166 | ||
| Genes | 2225 | ||
| mRNA | 2225 | ||
| misc RNA | 6 | ||
| rRNA | 4 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.02 % | ||
| CheckM Completeness | 98.88 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3022919v1 |
| GenBank Assembly Accession | GCA_030229195.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030229195.1 [NCBI] |
| BioSample | SAMN35346755 [NCBI] |
| BioProject | PRJNA804245 [NCBI] |
| Submitter | Duke University |
| Submission Date | 2023-05-24T14:12:06.363 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASPHD01 |
| NCBI TaxID | 37637 |
| Isolation Source | nasopharyngeal swab |
| Geo Location | Botswana: Gaborone |
