Genome Meta Information: Sneathia sanguinegens CCUG 42621 (GCA_030238465.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030238465.1 | ||
| HOMD Taxon-ID | HMT-0837 | ||
| Species Name (in use by HOMD) | Sneathia sanguinegens | ||
| Organism Name (as deposited) | HMT-837 Sneathia sanguinegens CCUG 42621 | ||
| Strain or Isolate | CCUG 42621 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia; s__Sneathia sanguinegens |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 20 | ||
| Contigs |
|
||
| Total Sequence Length | 1,334,124 (bp) | ||
| GC Percentage | 27.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/238/465/GCA_030238465.1_ASM3023846v1 | ||
| CDS | 1379 | ||
| Genes | 1434 | ||
| mRNA | 1434 | ||
| misc RNA | 9 | ||
| rRNA | 7 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.18 % | ||
| CheckM Completeness | 87.55 % | ||
| CheckM Contamination | 0.61 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3023846v1 |
| GenBank Assembly Accession | GCA_030238465.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030238465.1 [NCBI] |
| BioSample | SAMN35559070 [NCBI] |
| BioProject | PRJNA46877 [NCBI] |
| Submitter | Virginia Commonwealth University |
| Submission Date | 2023-06-01T15:17:05.278 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASSPP01 |
| NCBI TaxID | 40543 |
| Isolation Source | Human amniotic fluid |
| Geo Location | Sweden: Goteborg |
