Genome Meta Information: Sneathia vaginalis CCUG 52976 (GCA_030238485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030238485.1 | ||
| HOMD Taxon-ID | HMT-0844 | ||
| Species Name (in use by HOMD) | Sneathia vaginalis | ||
| Organism Name (as deposited) | HMT-844 Sneathia vaginalis CCUG 52976 | ||
| Strain or Isolate | CCUG 52976 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia; s__Sneathia vaginalis |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 14 | ||
| Contigs |
|
||
| Total Sequence Length | 1,311,068 (bp) | ||
| GC Percentage | 28.87 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/238/485/GCA_030238485.1_ASM3023848v1 | ||
| CDS | 1437 | ||
| Genes | 1494 | ||
| mRNA | 1494 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.33 % | ||
| CheckM Completeness | 83.28 % | ||
| CheckM Contamination | 1.84 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3023848v1 |
| GenBank Assembly Accession | GCA_030238485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030238485.1 [NCBI] |
| BioSample | SAMN35558468 [NCBI] |
| BioProject | PRJNA46877 [NCBI] |
| Submitter | Virginia Commonwealth University |
| Submission Date | 2023-06-01T15:01:05.711 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASSPO01 |
| NCBI TaxID | 187101 |
| Isolation Source | human blood |
| Geo Location | France: Strasbourg |
