Genome Meta Information: Nanosynbacter fur ML1 (GCA_030253515.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030253515.1 | ||
| HOMD Taxon-ID | HMT-0488 | ||
| Species Name (in use by HOMD) | Nanosynbacter fur | ||
| Organism Name (as deposited) | HMT-488 Nanosynbacter fur ML1 | ||
| Strain or Isolate | ML1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter; s__Nanosynbacter lyticus_A |
||
| Sequencing Technology | Illumina; Oxford Nanopore MinION | ||
| Genome Coverage | 5 | ||
| Contigs |
|
||
| Total Sequence Length | 823,929 (bp) | ||
| GC Percentage | 51.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/253/515/GCA_030253515.1_ASM3025351v1 | ||
| CDS | 850 | ||
| Genes | 900 | ||
| mRNA | 900 | ||
| misc RNA | 4 | ||
| rRNA | 3 | ||
| tRNA | 43 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 86.24 % | ||
| CheckM Completeness | 85.34 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3025351v1 |
| GenBank Assembly Accession | GCA_030253515.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030253515.1 [NCBI] |
| BioSample | SAMN34266292 [NCBI] |
| BioProject | PRJNA957798 [NCBI] |
| Submitter | University of Washington, Mougous Lab |
| Submission Date | 2023-04-20T15:27:03.660 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2093824 |
| Isolation Source | Human dental plaque |
| Geo Location | USA: Seattle |
