Genome Meta Information: Saccharimonas sp. HMT-349 ML1 (GCA_030253535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030253535.1 | ||
| HOMD Taxon-ID | HMT-0349 | ||
| Species Name (in use by HOMD) | Saccharimonas sp. HMT-349 | ||
| Organism Name (as deposited) | HMT-349 Saccharimonas sp. HMT-349 ML1 | ||
| Strain or Isolate | ML1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Saccharimonadaceae;g__Saccharimonas; s__Saccharimonas sp905371715 |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 864,133 (bp) | ||
| GC Percentage | 49.12 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/253/535/GCA_030253535.1_ASM3025353v1 | ||
| CDS | 856 | ||
| Genes | 909 | ||
| mRNA | 909 | ||
| misc RNA | 3 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 86.21 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3025353v1 |
| GenBank Assembly Accession | GCA_030253535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030253535.1 [NCBI] |
| BioSample | SAMN34266291 [NCBI] |
| BioProject | PRJNA957798 [NCBI] |
| Submitter | University of Washington, Mougous Lab |
| Submission Date | 2023-04-20T15:27:03.646 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 3043284 |
| Isolation Source | Human dental plaque |
| Geo Location | USA: Seattle |
