Genome Meta Information: Corynebacterium afermentans DSM 44280 (GCA_030408355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030408355.1 | ||
| HOMD Taxon-ID | HMT-0030 | ||
| Species Name (in use by HOMD) | Corynebacterium afermentans | ||
| Organism Name (as deposited) | HMT-030 Corynebacterium afermentans DSM 44280 | ||
| Strain or Isolate | DSM 44280 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium afermentans |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 64.6 | ||
| Contigs |
|
||
| Total Sequence Length | 2,375,453 (bp) | ||
| GC Percentage | 64.73 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/355/GCA_030408355.1_ASM3040835v1 | ||
| CDS | 2169 | ||
| Genes | 2246 | ||
| mRNA | 2246 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.4 % | ||
| CheckM Contamination | 0.72 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3040835v1 |
| GenBank Assembly Accession | GCA_030408355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030408355.1 [NCBI] |
| BioSample | SAMN07977566 [NCBI] |
| BioProject | PRJNA417151 [NCBI] |
| Submitter | Bielefeld University |
| Submission Date | 2017-11-04T11:17:02.853 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 144183 |
| Isolation Source | blood culture |
| Geo Location | Canada |
