Genome Meta Information: Porphyromonas gingivalis yellow (GCA_030440475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030440475.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis yellow | ||
| Strain or Isolate | yellow | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 72 | ||
| Contigs |
|
||
| Total Sequence Length | 2,515,718 (bp) | ||
| GC Percentage | 48.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/475/GCA_030440475.1_ASM3044047v1 | ||
| CDS | 2141 | ||
| Genes | 2228 | ||
| mRNA | 2228 | ||
| misc RNA | 21 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.44 % | ||
| CheckM Completeness | 98.04 % | ||
| CheckM Contamination | 0.55 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 4 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3044047v1 |
| GenBank Assembly Accession | GCA_030440475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030440475.1 [NCBI] |
| BioSample | SAMN28956760 [NCBI] |
| BioProject | PRJNA847540 [NCBI] |
| Submitter | universitair medish centrum groningen |
| Submission Date | 2022-06-10T09:16:03.977 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 837 |
| Isolation Source | patient with periodontitis |
| Geo Location | Netherlands |
