Genome Meta Information: Brochothrix thermosphacta DH-B18 (GCA_030503795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030503795.1 | ||
| HOMD Taxon-ID | HMT-0241 | ||
| Species Name (in use by HOMD) | Brochothrix thermosphacta | ||
| Organism Name (as deposited) | HMT-241 Brochothrix thermosphacta DH-B18 | ||
| Strain or Isolate | DH-B18 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix; s__Brochothrix thermosphacta |
||
| Sequencing Technology | Oxford Nanopore MinION | ||
| Genome Coverage | 62 | ||
| Contigs |
|
||
| Total Sequence Length | 2,558,019 (bp) | ||
| GC Percentage | 36.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/503/795/GCA_030503795.1_ASM3050379v1 | ||
| CDS | 2464 | ||
| Genes | 2633 | ||
| mRNA | 2633 | ||
| misc RNA | 55 | ||
| rRNA | 28 | ||
| tRNA | 85 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.16 % | ||
| CheckM Completeness | 97.7 % | ||
| CheckM Contamination | 0.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3050379v1 |
| GenBank Assembly Accession | GCA_030503795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030503795.1 [NCBI] |
| BioSample | SAMN36404986 [NCBI] |
| BioProject | PRJNA993613 [NCBI] |
| Submitter | University of Bonn |
| Submission Date | 2023-07-11T10:26:06.377 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2756 |
| Isolation Source | raw sausage |
| Geo Location | Germany: in the city of Bonn |
