Genome Meta Information: Leptotrichia hongkongensis S18M_Sa_5 (GCA_030527835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030527835.1 | ||
| HOMD Taxon-ID | HMT-0213 | ||
| Species Name (in use by HOMD) | Leptotrichia hongkongensis | ||
| Organism Name (as deposited) | HMT-213 Leptotrichia hongkongensis S18M_Sa_5 | ||
| Strain or Isolate | S18M_Sa_5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia hongkongensis |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 32.8353 | ||
| Contigs |
|
||
| Total Sequence Length | 2,004,496 (bp) | ||
| GC Percentage | 29.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/527/835/GCA_030527835.1_ASM3052783v1 | ||
| CDS | 1842 | ||
| Genes | 1875 | ||
| mRNA | 1875 | ||
| misc RNA | 15 | ||
| rRNA | 0 | ||
| tRNA | 17 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.82 % | ||
| CheckM Completeness | 87.91 % | ||
| CheckM Contamination | 0.61 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3052783v1 |
| GenBank Assembly Accession | GCA_030527835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN36400167 [NCBI] |
| BioProject | PRJNA983076 [NCBI] |
| Submitter | Center for Bioinformatics |
| Submission Date | 2023-07-11T04:00:15.160 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAUMZZ01 |
| NCBI TaxID | 554406 |
| Isolation Source | saliva |
| Geo Location | Germany: Zoo Saarbruecken |
