Genome Meta Information: Rothia aeria S12M_Sa_16 (GCA_030530555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030530555.1 | ||
| HOMD Taxon-ID | HMT-0188 | ||
| Species Name (in use by HOMD) | Rothia aeria | ||
| Organism Name (as deposited) | HMT-188 Rothia aeria S12M_Sa_16 | ||
| Strain or Isolate | S12M_Sa_16 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia aeria |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 14.142 | ||
| Contigs |
|
||
| Total Sequence Length | 2,429,980 (bp) | ||
| GC Percentage | 57.12 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/530/555/GCA_030530555.1_ASM3053055v1 | ||
| CDS | 2104 | ||
| Genes | 2155 | ||
| mRNA | 2155 | ||
| misc RNA | 12 | ||
| rRNA | 2 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 92.05 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3053055v1 |
| GenBank Assembly Accession | GCA_030530555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030530555.1 [NCBI] |
| BioSample | SAMN36400025 [NCBI] |
| BioProject | PRJNA983076 [NCBI] |
| Submitter | Center for Bioinformatics |
| Submission Date | 2023-07-11T04:00:13.250 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAUMUS01 |
| NCBI TaxID | 1885016 |
| Isolation Source | saliva |
| Geo Location | Germany: Zoo Saarbruecken |
