Genome Meta Information: Bradyrhizobium elkanii K03D-Be (GCA_030585185.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030585185.1 | ||
| HOMD Taxon-ID | HMT-0597 | ||
| Species Name (in use by HOMD) | Bradyrhizobium elkanii | ||
| Organism Name (as deposited) | HMT-597 Bradyrhizobium elkanii K03D-Be | ||
| Strain or Isolate | K03D-Be | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium; s__Bradyrhizobium elkanii |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 170.14 | ||
| Contigs |
|
||
| Total Sequence Length | 9,982,772 (bp) | ||
| GC Percentage | 63.65 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/585/185/GCA_030585185.1_ASM3058518v1 | ||
| CDS | 9353 | ||
| Genes | 9488 | ||
| mRNA | 9488 | ||
| misc RNA | 76 | ||
| rRNA | 3 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.32 % | ||
| CheckM Completeness | 99.32 % | ||
| CheckM Contamination | 0.83 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3058518v1 |
| GenBank Assembly Accession | GCA_030585185.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030585185.1 [NCBI] |
| BioSample | SAMN34405178 [NCBI] |
| BioProject | PRJNA962162 [NCBI] |
| Submitter | VEIL Bradyrhizobium group |
| Submission Date | 2023-04-27T14:36:17.050 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29448 |
| Isolation Source | root nodule |
| Geo Location | USA: Delaware |
