Genome Meta Information: Leptotrichia sp. HMT-225 HMT-225 (GCA_030644325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030644325.1 | ||
| HOMD Taxon-ID | HMT-0225 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-225 | ||
| Organism Name (as deposited) | HMT-225 Leptotrichia sp. HMT-225 HMT-225 | ||
| Strain or Isolate | HMT-225 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia massiliensis |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 455 | ||
| Contigs |
|
||
| Total Sequence Length | 2,452,811 (bp) | ||
| GC Percentage | 29.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/325/GCA_030644325.1_ASM3064432v1 | ||
| CDS | 2272 | ||
| Genes | 2348 | ||
| mRNA | 2348 | ||
| misc RNA | 14 | ||
| rRNA | 15 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.66 % | ||
| CheckM Contamination | 0.53 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3064432v1 |
| GenBank Assembly Accession | GCA_030644325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030644325.1 [NCBI] |
| BioSample | SAMN35884267 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2023-06-24T09:52:06.386 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 3058373 |
| Isolation Source | human oral cavity |
| Geo Location | USA: Boston, Massachusetts |
