Genome Meta Information: Schaalia hongkongensis F0543 (GCA_030644345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030644345.1 | ||
| HOMD Taxon-ID | HMT-0178 | ||
| Species Name (in use by HOMD) | Schaalia hongkongensis | ||
| Organism Name (as deposited) | HMT-178 Schaalia hongkongensis F0543 | ||
| Strain or Isolate | F0543 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia hongkongensis |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 314 | ||
| Contigs |
|
||
| Total Sequence Length | 2,728,238 (bp) | ||
| GC Percentage | 70.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/345/GCA_030644345.1_ASM3064434v1 | ||
| CDS | 2290 | ||
| Genes | 2358 | ||
| mRNA | 2358 | ||
| misc RNA | 7 | ||
| rRNA | 6 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3064434v1 |
| GenBank Assembly Accession | GCA_030644345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN35889121 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2023-06-24T10:09:05.730 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 3059029 |
| Isolation Source | human oral cavity |
| Geo Location | USA: Boston, Massachusetts |
