Genome Meta Information: Schaalia sp. HMT-172 F0311 (GCA_030644365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030644365.1 | ||
| HOMD Taxon-ID | HMT-0172 | ||
| Species Name (in use by HOMD) | Schaalia sp. HMT-172 | ||
| Organism Name (as deposited) | HMT-172 Schaalia sp. HMT-172 F0311 | ||
| Strain or Isolate | F0311 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia sp000466265 |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 262 | ||
| Contigs |
|
||
| Total Sequence Length | 2,533,704 (bp) | ||
| GC Percentage | 66.4 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/644/365/GCA_030644365.1_ASM3064436v1 | ||
| CDS | 2063 | ||
| Genes | 2132 | ||
| mRNA | 2132 | ||
| misc RNA | 9 | ||
| rRNA | 9 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3064436v1 |
| GenBank Assembly Accession | GCA_030644365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030644365.1 [NCBI] |
| BioSample | SAMN35889120 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2023-06-24T10:04:05.690 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 3059028 |
| Isolation Source | human oral cavity |
| Geo Location | USA: Blacksberg, Virginia |
