Genome Meta Information: Porphyromonas gingivalis yellow_1 (GCA_030675975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030675975.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis yellow_1 | ||
| Strain or Isolate | yellow_1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 72 | ||
| Contigs |
|
||
| Total Sequence Length | 2,376,358 (bp) | ||
| GC Percentage | 48.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/675/975/GCA_030675975.1_ASM3067597v1 | ||
| CDS | 2012 | ||
| Genes | 2084 | ||
| mRNA | 2084 | ||
| misc RNA | 21 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.46 % | ||
| CheckM Completeness | 97.9 % | ||
| CheckM Contamination | 0.55 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 4 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3067597v1 |
| GenBank Assembly Accession | GCA_030675975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030675975.1 [NCBI] |
| BioSample | SAMN28937641 [NCBI] |
| BioProject | PRJNA847540 [NCBI] |
| Submitter | universitair medish centrum groningen |
| Submission Date | 2022-06-09T10:58:03.980 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAMZRC01 |
| NCBI TaxID | 837 |
| Isolation Source | oral cavity from patient with periodontitis |
| Geo Location | Netherlands |
