Taxon Table | Genome Table
Genome Meta Information:
Porphyromonas
gingivalis
grey_1 (GCA_030676125.1)
| HOMD Genome-ID |
GCA_030676125.1
|
| HOMD Taxon-ID |
HMT-0619
|
| Species Name (in use by HOMD) |
Porphyromonas gingivalis
|
| Organism Name (as deposited) |
HMT-619 Porphyromonas gingivalis grey_1
|
| Strain or Isolate |
grey_1
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;
s__Porphyromonas gingivalis |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
76
|
| Contigs |
Number of Contigs: 119
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,358,334 (bp) |
| GC Percentage |
48.19
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/676/125/GCA_030676125.1_ASM3067612v1
|
| CDS |
2003
|
| Genes |
2076
|
| mRNA |
2076
|
| misc RNA |
21
|
| rRNA |
4
|
| tRNA |
47
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.48 %
|
| CheckM Completeness |
97.49 %
|
| CheckM Contamination |
0.55 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
3 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM3067612v1
|
| GenBank Assembly Accession |
GCA_030676125.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_030676125.1
[NCBI]
|
| BioSample |
SAMN28937640
[NCBI]
|
| BioProject |
PRJNA847540
[NCBI]
|
| Submitter |
universitair medish centrum groningen
|
| Submission Date |
2022-06-09T10:58:03.967
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JAMZRD01
|
| NCBI TaxID |
837
|
| Isolation Source |
oral cavity from patient with periodontitis
|
| Geo Location |
Netherlands
|
