Genome Meta Information: Limosilactobacillus reuteri RE225 (GCA_030721705.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030721705.1 | ||
| HOMD Taxon-ID | HMT-0818 | ||
| Species Name (in use by HOMD) | Limosilactobacillus reuteri | ||
| Organism Name (as deposited) | HMT-818 Limosilactobacillus reuteri RE225 | ||
| Strain or Isolate | RE225 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus reuteri_G |
||
| Sequencing Technology | Illumina NovaSeq; Oxford Nanopore | ||
| Genome Coverage | 616 | ||
| Contigs |
|
||
| Total Sequence Length | 2,280,129 (bp) | ||
| GC Percentage | 38.65 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/721/705/GCA_030721705.1_ASM3072170v1 | ||
| CDS | 2192 | ||
| Genes | 2376 | ||
| mRNA | 2376 | ||
| misc RNA | 95 | ||
| rRNA | 18 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.47 % | ||
| CheckM Completeness | 98.26 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3072170v1 |
| GenBank Assembly Accession | GCA_030721705.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030721705.1 [NCBI] |
| BioSample | SAMN36470972 [NCBI] |
| BioProject | PRJNA995515 [NCBI] |
| Submitter | Ningbo University |
| Submission Date | 2023-07-17T08:12:04.323 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1598 |
| Isolation Source | gastrointestinal tract |
| Geo Location | China:Ningbo |
