Genome Meta Information: Cardiobacterium hominis CHUV0807 (GCA_900079085.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900079085.1 | ||
| HOMD Taxon-ID | HMT-0633 | ||
| Species Name (in use by HOMD) | Cardiobacterium hominis | ||
| Organism Name (as deposited) | HMT-633 Cardiobacterium hominis CHUV0807 | ||
| Strain or Isolate | CHUV0807 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Cardiobacteriales;f__Cardiobacteriaceae;g__Cardiobacterium; s__Cardiobacterium hominis |
||
| Sequencing Technology | MiSeq Desktop Sequencer Illumina | ||
| Genome Coverage | 306 | ||
| Contigs |
|
||
| Total Sequence Length | 2,646,022 (bp) | ||
| GC Percentage | 59.01 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/079/085/GCA_900079085.1_c_hominis_CHUV0807 | ||
| CDS | 2431 | ||
| Genes | 2494 | ||
| mRNA | 2494 | ||
| misc RNA | 13 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.66 % | ||
| CheckM Completeness | 96.52 % | ||
| CheckM Contamination | 3.51 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | c_hominis_CHUV0807 |
| GenBank Assembly Accession | GCA_900079085.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900079085.1 [NCBI] |
| BioSample | SAMEA3920025 [NCBI] |
| BioProject | PRJEB13157 [NCBI] |
| Submitter | CHUV-UNIL |
| Submission Date | 2016-07-26T11:05:20.950 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | FKLO01 |
| NCBI TaxID | 2718 |
| Isolation Source | Blood cultures |
| Geo Location | Switzerland |
