Genome Meta Information: Tannerella forsythia UB4 (GCA_900096725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900096725.1 | ||
| HOMD Taxon-ID | HMT-0613 | ||
| Species Name (in use by HOMD) | Tannerella forsythia | ||
| Organism Name (as deposited) | HMT-613 Tannerella forsythia UB4 | ||
| Strain or Isolate | UB4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella; s__Tannerella forsythia |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 87 | ||
| Contigs |
|
||
| Total Sequence Length | 3,233,032 (bp) | ||
| GC Percentage | 47.21 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/096/725/GCA_900096725.1_TFUB4 | ||
| CDS | 2678 | ||
| Genes | 2751 | ||
| mRNA | 2751 | ||
| misc RNA | 23 | ||
| rRNA | 5 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.72 % | ||
| CheckM Completeness | 98.25 % | ||
| CheckM Contamination | 2.17 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | TFUB4 |
| GenBank Assembly Accession | GCA_900096725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900096725.1 [NCBI] |
| BioSample | SAMEA4441422 [NCBI] |
| BioProject | PRJEB15383 [NCBI] |
| Submitter | UNIVERSITY OF SHEFFIELD |
| Submission Date | 2016-10-01T12:07:53.990 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FMMN01 |
| NCBI TaxID | 28112 |
| Isolation Source | sub-gingival plaque |
| Geo Location | USA |
