Genome Meta Information: Tannerella forsythia UB20 (GCA_900096735.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900096735.1 | ||
| HOMD Taxon-ID | HMT-0613 | ||
| Species Name (in use by HOMD) | Tannerella forsythia | ||
| Organism Name (as deposited) | HMT-613 Tannerella forsythia UB20 | ||
| Strain or Isolate | UB20 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella; s__Tannerella forsythia |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 74 | ||
| Contigs |
|
||
| Total Sequence Length | 3,252,894 (bp) | ||
| GC Percentage | 47.06 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/096/735/GCA_900096735.1_TFUB20 | ||
| CDS | 2691 | ||
| Genes | 2771 | ||
| mRNA | 2771 | ||
| misc RNA | 31 | ||
| rRNA | 4 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.72 % | ||
| CheckM Completeness | 97.76 % | ||
| CheckM Contamination | 2.65 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | TFUB20 |
| GenBank Assembly Accession | GCA_900096735.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900096735.1 [NCBI] |
| BioSample | SAMEA4441423 [NCBI] |
| BioProject | PRJEB15383 [NCBI] |
| Submitter | UNIVERSITY OF SHEFFIELD |
| Submission Date | 2016-10-01T12:07:54.176 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FMMM01 |
| NCBI TaxID | 28112 |
| Isolation Source | sub-gingival plaque |
| Geo Location | USA |
