Genome Meta Information: Lactococcus lactis ATCC 19435 (GCA_900099625.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900099625.1 | ||
| HOMD Taxon-ID | HMT-0804 | ||
| Species Name (in use by HOMD) | Lactococcus lactis | ||
| Organism Name (as deposited) | HMT-804 Lactococcus lactis ATCC 19435 | ||
| Strain or Isolate | ATCC 19435 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus; s__Lactococcus lactis |
||
| Sequencing Technology | Illumina HiSeq 2500 | ||
| Genome Coverage | 651 | ||
| Contigs |
|
||
| Total Sequence Length | 2,514,221 (bp) | ||
| GC Percentage | 35.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/099/625/GCA_900099625.1_IMG-taxon_2597490350_annotated_assembly | ||
| CDS | 2482 | ||
| Genes | 2582 | ||
| mRNA | 2582 | ||
| misc RNA | 41 | ||
| rRNA | 6 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 96.58 % | ||
| CheckM Contamination | 1.01 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2597490350 annotated |
| GenBank Assembly Accession | GCA_900099625.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900099625.1 [NCBI] |
| BioSample | SAMN02982984 [NCBI] |
| BioProject | PRJEB15957 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2014-08-11T20:08:24.370 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FMTF01 |
| NCBI TaxID | 1358 |
| Isolation Source | |
| Geo Location | missing |
