Genome Meta Information: Paenibacillus typhae CGMCC 1.11012 (GCA_900099765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900099765.1 | ||
| HOMD Taxon-ID | HMT-0048 | ||
| Species Name (in use by HOMD) | Paenibacillus typhae | ||
| Organism Name (as deposited) | HMT-048 Paenibacillus typhae CGMCC 1.11012 | ||
| Strain or Isolate | CGMCC 1.11012 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus; s__Paenibacillus typhae |
||
| Sequencing Technology | Illumina HiSeq 2500-1TB | ||
| Genome Coverage | 148 | ||
| Contigs |
|
||
| Total Sequence Length | 6,740,451 (bp) | ||
| GC Percentage | 51.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/099/765/GCA_900099765.1_IMG-taxon_2667527451_annotated_assembly | ||
| CDS | 5881 | ||
| Genes | 6104 | ||
| mRNA | 6104 | ||
| misc RNA | 135 | ||
| rRNA | 8 | ||
| tRNA | 79 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.11 % | ||
| CheckM Contamination | 1.37 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2667527451 annotated |
| GenBank Assembly Accession | GCA_900099765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900099765.1 [NCBI] |
| BioSample | SAMN05216192 [NCBI] |
| BioProject | PRJEB15952 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2016-06-08T14:21:53.090 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FNDX01 |
| NCBI TaxID | 1174501 |
| Isolation Source | missing |
| Geo Location | missing |
