Genome Meta Information: Pseudomonas otitidis DSM 17224 (GCA_900111835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900111835.1 | ||
| HOMD Taxon-ID | HMT-0834 | ||
| Species Name (in use by HOMD) | Pseudomonas otitidis | ||
| Organism Name (as deposited) | HMT-834 Pseudomonas otitidis DSM 17224 | ||
| Strain or Isolate | DSM 17224 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas; s__Metapseudomonas otitidis |
||
| Sequencing Technology | Illumina HiSeq 2500-1TB | ||
| Genome Coverage | 105 | ||
| Contigs |
|
||
| Total Sequence Length | 6,344,741 (bp) | ||
| GC Percentage | 66.86 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/111/835/GCA_900111835.1_IMG-taxon_2663762781_annotated_assembly | ||
| CDS | 5734 | ||
| Genes | 5885 | ||
| mRNA | 5885 | ||
| misc RNA | 80 | ||
| rRNA | 5 | ||
| tRNA | 65 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.84 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2663762781 annotated |
| GenBank Assembly Accession | GCA_900111835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900111835.1 [NCBI] |
| BioSample | SAMN05216263 [NCBI] |
| BioProject | PRJEB17072 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2016-06-08T14:26:11.346 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FOJP01 |
| NCBI TaxID | 319939 |
| Isolation Source | missing |
| Geo Location | missing |
